Chromatin/Skyline nucleosome browser

Skyline - a suite of algorithms and programs for the identification of nucleosome peaks over the genome
Skyline is part of the Chromatin nucleosome research project at the University of Nebraska-Lincoln.

References:

Feedback: Send your questions or comments to Istvan Ladunga at sladunga@unl.edu.

Display options
DNA region conditions peaks curves
organism: start: ≤w≤ peaks wide * moving average
chromosome: width: ≤h≤ vmark all * Gaussian
  graphs:   background: * Laplacian of Gaussian

Select experiments
Roche/454 Illumina/Solexa Illumina/Solexa Illumina/Solexa Whole genome PolII MNase Salt extract ACF Sonication
with cross-linking with cross-linking no cross-linking in vitro transcript mapping RNA PolII mutant at 2 10 and 15 microliters constrained to 146bp constrained to 146bp constrained to 146bp
Pugh H2A.Z [info] Segal YPD 2 [info] Segal YPD 1 nocl [info] SegalInVitroR1 [info] Regev 0-31 forward [info] Friedman PolII 0 min [info] Friedman MNase 02 ul [info] S-L-I-Salt [info] S-L-I-ACF [info] Struhl-Liu Sonication [info]
Pugh H3 [info] Segal YPD 3 [info] Segal YPD 2 nocl [info] SegalInVitroR2 [info] Regev 0-31 reverse [info] Friedman PolII 20 min [info] Friedman MNase 10 ul [info]      
Pugh H4 [info] Segal ethanol 1 [info] Segal YPD 3 nocl [info]   Regev 15-31 forward [info] Friedman PolII 120 min [info] Friedman MNase 15 ul [info]      
Segal Roche/454 [info] Segal ethanol 2 [info] Segal YPD 4 nocl [info]   Regev 1reads src. [info] peak calls peak calls      
  Segal galactose 1 [info] Segal ethanol 1 nocl [info]     Friedman PolII 0 min pc [info] Friedman MNase 02 ul pc [info]      
  Iyer control+heatshock [info] Segal ethanol 2 nocl [info]     Friedman PolII 20 min pc [info] Friedman MNase 10 ul pc [info]      
  Iyer heatshock [info] Segal galactose 1 nocl [info]     Friedman PolII 120 min pc [info] Friedman MNase 15 ul pc [info]      
  Iyer control [info] Segal galactose 2 nocl [info]